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External Libraries Used

NUPACK (version 3.2.2) and RNAFold from the ViennaRNA (version 2.4.10) package were used to confirm generated sequences fold onto the correct topologies. The licences for these libraries are included below.

NUPACK Software License Agreement for Non-Commercial Academic Use and Redistribution

Copyright © 2018 California Institute of Technology. All rights reserved.

Use and redistribution in source form and/or binary form, with or without modification, are permitted for non-commercial academic purposes only, provided that the following conditions are met:

  1. Redistributions in source form must retain the above copyright notice, this list of conditions and the following disclaimer.
  2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation provided with the distribution.
  3. Web applications that use the software in source form or binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in online documentation provided with the web application.
  4. Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote derivative works without specific prior written permission.

Disclaimer

This software is provided by the copyright holders and contributors "as is" and any express or implied warranties, including, but not limited to, the implied warranties of merchantability and fitness for a particular purpose are disclaimed. In no event shall the copyright holder or contributors be liable for any direct, indirect, incidental, special, exemplary, or consequential damages (including, but not limited to, procurement of substitute goods or services; loss of use, data, or profits; or business interruption) however caused and on any theory of liability, whether in contract, strict liability, or tort (including negligence or otherwise) arising in any way out of the use of this software, even if advised of the possibility of such damage.

ViennaRNA Disclaimer and Copyright

The programs, library and source code of the Vienna RNA Package are free software. They are distributed in the hope that they will be useful but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

Permission is granted for research, educational, and commercial use and modification so long as 1) the package and any derived works are notredistributed for any fee, other than media costs, 2) proper credit is given to the authors and the Institute for Theoretical Chemistry of the University of Vienna.

If you want to include this software in a commercial product, please contact the authors.

PyMOL was used for 3DF-RAG to determine RMSD. Copyright and trademark information are included below.

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